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  5. Lfl_g34715

Lfl_g34715


Description : component *(ZFC3H1) of PAXT nucleoplasmic activation complex & original description: none


Gene families : OG0005919 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005919_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g34715

Target Alias Description ECC score Gene Family Method Actions
AT2G39580 No alias CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain... 0.04 OrthoFinder output from all 47 species
Ala_g18549 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Als_g01218 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Aob_g19968 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ceric.22G060700.1 Ceric.22G060700 component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Dcu_g10247 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Dcu_g16818 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
GSVIVT01016589001 No alias No description available 0.06 OrthoFinder output from all 47 species
LOC_Os12g37890.1 LOC_Os12g37890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g23008 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Mp2g02780.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g01522 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Ppi_g56509 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Sam_g48944 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Smo437272 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc04g011380.4.1 Solyc04g011380 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Spa_g48224 No alias component *(ZFC3H1) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019607 Putative_zinc-finger_domain 1443 1461
No external refs found!