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  5. Cba_g39390

Cba_g39390


Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g39390

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00050800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Adi_g041465 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g123329 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g09794 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g11867 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g64518 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_10430200g0010 No alias component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_90134g0010 No alias component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Msp_g38999 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.01 OrthoFinder output from all 47 species
Pp3c20_2800V3.1 Pp3c20_2800 60S acidic ribosomal protein family 0.02 OrthoFinder output from all 47 species
Sam_g03056 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05395 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g38962 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g41052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g44445 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo133023 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Zm00001e021844_P001 Zm00001e021844 component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex IEP HCCA
BP GO:0006103 2-oxoglutarate metabolic process IEP HCCA
CC GO:0009353 mitochondrial oxoglutarate dehydrogenase complex IEP HCCA
CC GO:0030062 mitochondrial tricarboxylic acid cycle enzyme complex IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
CC GO:0045239 tricarboxylic acid cycle enzyme complex IEP HCCA
CC GO:0045240 dihydrolipoyl dehydrogenase complex IEP HCCA
CC GO:0045252 oxoglutarate dehydrogenase complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!