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  5. Cba_g38923

Cba_g38923


Description : ASK-type linker component of SCF E3 ubiquitin ligase complexes & original description: none


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g38923
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT2G03170 ASK14, SK14 SKP1-like 14 0.04 OrthoFinder output from all 47 species
AT2G25700 ASK3, SK3 SKP1-like 3 0.01 OrthoFinder output from all 47 species
AT4G34210 ASK11, SK11 SKP1-like 11 0.02 OrthoFinder output from all 47 species
AT4G34470 SK12, ASK12 SKP1-like 12 0.02 OrthoFinder output from all 47 species
Dac_g39230 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
LOC_Os07g22680.1 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species
LOC_Os07g43180.1 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Len_g26515 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Lfl_g21224 ASK11, SK11 ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Lfl_g21720 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Lfl_g27087 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
MA_485836g0010 SK12, ASK12 target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
MA_55031g0010 ASK2, SKP1B target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species
Pir_g28883 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Solyc03g112710.1.1 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Solyc11g008230.1.1 ASK11, SK11,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Zm00001e011287_P001 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Zm00001e011288_P001 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Zm00001e020534_P002 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Zm00001e042493_P001 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!