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  5. Cba_g38522

Cba_g38522 (EMB1270)


Aliases : EMB1270

Description : plastidial splicing factor *(EMB1270) & original description: none


Gene families : OG0007608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007608_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g38522
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g022402 EMB1270 plastidial splicing factor *(EMB1270) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os06g09880.1 EMB1270, LOC_Os06g09880 Pentatricopeptide repeat-containing protein At3g18110,... 0.03 OrthoFinder output from all 47 species
MA_712594g0010 EMB1270 Pentatricopeptide repeat-containing protein At3g18110,... 0.03 OrthoFinder output from all 47 species
Nbi_g14037 EMB1270 plastidial splicing factor *(EMB1270) & original... 0.03 OrthoFinder output from all 47 species
Pir_g10962 EMB1270 plastidial splicing factor *(EMB1270) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g096830.4.1 EMB1270, Solyc03g096830 Pentatricopeptide repeat-containing protein At3g18110,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 262 310
IPR002885 Pentatricopeptide_repeat 439 486
IPR002885 Pentatricopeptide_repeat 792 816
IPR002885 Pentatricopeptide_repeat 406 436
IPR033443 PPR_long 978 1107
IPR002885 Pentatricopeptide_repeat 497 554
IPR002885 Pentatricopeptide_repeat 913 973
IPR002885 Pentatricopeptide_repeat 321 380
IPR002885 Pentatricopeptide_repeat 846 900
No external refs found!