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  5. Cba_g38222

Cba_g38222


Description : SSU processome assembly factor *(UTP2/NOP14) & original description: none


Gene families : OG0006351 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006351_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g38222

Target Alias Description ECC score Gene Family Method Actions
AT1G69070 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 OrthoFinder output from all 47 species
Aev_g04842 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Aop_g09330 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.5 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g260850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os03g40110.1 LOC_Os03g40110 SSU processome assembly factor (UTP2/NOP14) 0.03 OrthoFinder output from all 47 species
Len_g19715 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g35370 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g07610 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.04 OrthoFinder output from all 47 species
Sam_g35268 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Solyc05g011990.4.1 Solyc05g011990 SSU processome assembly factor (UTP2/NOP14) 0.02 OrthoFinder output from all 47 species
Spa_g12479 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e004967_P001 Zm00001e004967 SSU processome assembly factor (UTP2/NOP14) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007276 Nop14 602 967
IPR007276 Nop14 56 598
No external refs found!