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  5. Gb_01459

Gb_01459


Description : pectin methylesterase


Gene families : OG_01_0000078 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000078_tree ,
OG_02_0000108 (LandPlants) Phylogenetic Tree(s): OG_02_0000108_tree ,
OG_03_0002214 (SeedPlants) Phylogenetic Tree(s): OG_03_0002214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01459
Cluster HCCA: Cluster_664

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01014641001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os09g39760.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g22440.1 No alias pectin methylesterase 0.01 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp4g01190.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_24830V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_460V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Solyc01g079180.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e035522_P001 No alias pectin methylesterase 0.02 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 LandPlants
AT2G19150 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
AT2G36700 No alias Pectin lyase-like superfamily protein 0.01 LandPlants
AT2G36710 No alias Pectin lyase-like superfamily protein 0.04 LandPlants
AT2G47280 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
GSVIVT01014641001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 LandPlants
LOC_Os09g39760.1 No alias pectin methylesterase 0.04 LandPlants
MA_10267810g0010 No alias pectin methylesterase 0.02 LandPlants
MA_14449g0010 No alias pectin methylesterase 0.02 LandPlants
MA_304854g0010 No alias pectin methylesterase 0.03 LandPlants
MA_66089g0010 No alias pectin methylesterase 0.03 LandPlants
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
Pp3c3_24830V3.1 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
Pp3c8_1440V3.1 No alias Pectin lyase-like superfamily protein 0.01 LandPlants
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 LandPlants
Solyc07g043240.4.1 No alias pectin methylesterase 0.02 LandPlants
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 84 375
No external refs found!