Lfl_g34227 (CLPS3)

Aliases : CLPS3

Description : component *(Clp1) of Cleavage Factor II (CF-IIm) complex & original description: none

Gene families : OG0003520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003520_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g34227

Target	Alias	Description	ECC score	Gene Family Method
Aop_g22381	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species
Ceric.38G063700.1	CLPS3, Ceric.38G063700	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01032607001	CLPS3	RNA processing.RNA 3-end polyadenylation.Cleavage Factor...	0.03	OrthoFinder output from all 47 species
Msp_g12143	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005319	lipid transporter activity	IEP	HCCA
MF	GO:0005548	phospholipid transporter activity	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015914	phospholipid transport	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010655	Clp1_C	362	465
IPR032319	CLP1_P	160	343
IPR032324	Clp1_N	31	122

External Links

No external refs found!