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  5. Cba_g34893

Cba_g34893


Description : not classified & original description: none


Gene families : OG0000051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g34893

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00071540 MAP3KE1,... MAP3K epsilon protein kinase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G07150 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 0.02 OrthoFinder output from all 47 species
AT4G08480 MAPKKK9, MEKK2 mitogen-activated protein kinase kinase kinase 9 0.04 OrthoFinder output from all 47 species
AT4G36950 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 0.02 OrthoFinder output from all 47 species
AT5G55090 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 0.03 OrthoFinder output from all 47 species
Adi_g015337 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Adi_g089225 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Adi_g113313 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Als_g09765 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Als_g10654 MAPKKK15 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Als_g18955 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Als_g23116 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23193.t1 MAPKKK15, Aspi01Gene23193 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aspi01Gene25586.t1 MAPKKK15, Aspi01Gene25586 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038227 YDA, EMB71, MAPKKK4 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Azfi_s0188.g056768 MAPKKK8, ARAKIN,... EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Dac_g16997 MAPKKK15 EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
GSVIVT01012031001 MAP3KE1, MAPKKK7 Protein modification.phosphorylation.STE kinase... 0.02 OrthoFinder output from all 47 species
GSVIVT01026487001 MAP3KA, MAPKKK3 Protein modification.phosphorylation.STE kinase... 0.04 OrthoFinder output from all 47 species
LOC_Os03g15570.1 MAPKKK8, ARAKIN,... protein kinase (MAP3K-MEKK) 0.03 OrthoFinder output from all 47 species
LOC_Os03g49640.1 MAPKKK8, ARAKIN,... protein kinase (MAP3K-MEKK) 0.02 OrthoFinder output from all 47 species
LOC_Os03g55560.1 MAPKKK5, LOC_Os03g55560 protein kinase (MAP3K-MEKK) 0.02 OrthoFinder output from all 47 species
LOC_Os04g35700.1 MAP3KA, MAPKKK3,... protein kinase (MAP3K-MEKK) 0.03 OrthoFinder output from all 47 species
Len_g28258 MAPKKK16 EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Mp3g22830.1 MAPKKK8, ARAKIN,... protein kinase (MAP3K-MEKK) 0.02 OrthoFinder output from all 47 species
Nbi_g07620 MAP3KA, MAPKKK3 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Nbi_g27734 MAPKKK16 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Ppi_g13015 MAPKKK15 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ppi_g55015 NP2, MAPKKK2, ANP2 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Ppi_g62770 NP2, MAPKKK2, ANP2 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000141 MAPKKK17 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sam_g06722 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g07921 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g19718 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g39538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50686 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Solyc04g064590.3.1 MAP3KA, MAPKKK3,... Mitogen-activated protein kinase kinase kinase 3... 0.02 OrthoFinder output from all 47 species
Solyc07g051890.1.1 MAPKKK15, Solyc07g051890 protein kinase (MAP3K-MEKK) 0.02 OrthoFinder output from all 47 species
Solyc07g051920.1.1 MAPKKK16, Solyc07g051920 protein kinase (MAP3K-MEKK) 0.02 OrthoFinder output from all 47 species
Tin_g14634 MAPKKK8, ARAKIN,... EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Zm00001e023801_P002 MAPKKK8, ARAKIN,... protein kinase (MAP3K-MEKK) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA

No InterPro domains available for this sequence

No external refs found!