Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none
Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00010p00231390 | NUP96, PRE,... | Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Als_g02615 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0059.g034635 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g07068 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0092.g018938 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g11653 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005643 | nuclear pore | IEA | Interproscan |
BP | GO:0006913 | nucleocytoplasmic transport | IEA | Interproscan |
MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
CC | GO:0032039 | integrator complex | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007230 | Nup98_auto-Pept-S59_dom | 265 | 408 |
No external refs found! |