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  5. Cba_g32845

Cba_g32845


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g32845

Target Alias Description ECC score Gene Family Method Actions
AT1G48195 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 OrthoFinder output from all 47 species
Ala_g04911 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ala_g08740 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Als_g10254 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G050900.1 Ceric.20G050900 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ceric.34G043900.1 ZFN1, Ceric.34G043900 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pir_g16035 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g30586 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Solyc06g008740.3.1 Solyc06g008740 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032104 regulation of response to extracellular stimulus IEP HCCA
BP GO:0032107 regulation of response to nutrient levels IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 94 117
IPR000571 Znf_CCCH 140 165
IPR000571 Znf_CCCH 291 316
IPR000571 Znf_CCCH 339 363
IPR000571 Znf_CCCH 22 47
No external refs found!