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  5. Lfl_g33868

Lfl_g33868 (ATRBP45C)


Aliases : ATRBP45C

Description : regulatory factor *(RBP45/47) of mRNA stress granule formation & original description: none


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g33868

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00161920 ATRBP45A,... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00157p00079360 ATRBP47C',... Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00157p00080130 ATRBP47B,... Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.03 OrthoFinder output from all 47 species
Adi_g079154 ATRBP47B, RBP47B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113480 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Adi_g113754 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Als_g07576 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.07 OrthoFinder output from all 47 species
Als_g26974 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Azfi_s1476.g103493 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g08715 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g73180 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.03G014200.1 Ceric.03G014200 regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Dac_g07596 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
GSVIVT01031780001 ATRBP47B, RBP47B Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
LOC_Os04g37690.1 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
MA_10430323g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
MA_10433182g0010 ATRBP45C Polyadenylate-binding protein RBP47C OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Msp_g08309 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Msp_g10876 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Pir_g17296 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pp3c12_10910V3.1 Pp3c12_10910 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Pp3c12_10960V3.1 Pp3c12_10960 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021871 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sam_g18732 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Solyc03g031720.3.1 ATRBP45C, Solyc03g031720 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Solyc07g064510.3.1 ATRBP45C, Solyc07g064510 mRNA-binding regulatory factor (RBP45/47) 0.06 OrthoFinder output from all 47 species
Solyc10g050860.3.1 ATRBP47B,... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Zm00001e010479_P003 ATRBP45A,... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Zm00001e011585_P002 ATRBP45C, Zm00001e011585 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 117 183
IPR000504 RRM_dom 210 279
IPR000504 RRM_dom 327 390
No external refs found!