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Cba_g31463 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g31463

Target Alias Description ECC score Gene Family Method Actions
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0375.g067244 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=271-2382 0.02 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15928 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12875 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os01g60860.1 LOC_Os01g60860 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_290g0010 PUB14, ATPUB14 U-box domain-containing protein 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_9478009g0010 PUB15 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp5g12560.1 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Nbi_g02242 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22628 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33917 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17363 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097 No alias not classified & original description: CDS=1-2154 0.02 OrthoFinder output from all 47 species
Solyc01g096460.2.1 Solyc01g096460 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g14209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003398_P001 PUB15, Zm00001e003398 U-box domain-containing protein 15 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0045273 respiratory chain complex II IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 509 545
IPR000225 Armadillo 427 464
IPR003613 Ubox_domain 298 368
No external refs found!