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  5. Cba_g29970

Cba_g29970 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g29970

Target Alias Description ECC score Gene Family Method Actions
Adi_g018175 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12032 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12937 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37418.t1 SR30, ATSRP30,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G080500.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.1Z097200.1 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Cre06.g278239 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Gb_20155 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Len_g48587 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
MA_141465g0010 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Ppi_g03118 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05849 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 75
IPR000504 RRM_dom 113 175
No external refs found!