AMTR_s00031p00119810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00031.52

Description : Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana


Gene families : OG_01_0011510 (Archaeplastida) Phylogenetic Tree(s): OG_01_0011510_tree ,
OG_02_0011402 (LandPlants) Phylogenetic Tree(s): OG_02_0011402_tree ,
OG_03_0011461 (SeedPlants) Phylogenetic Tree(s): OG_03_0011461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00031p00119810
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002488_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.05 LandPlants
AT1G16830 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 594 640
IPR002885 Pentatricopeptide_repeat 418 465
IPR002885 Pentatricopeptide_repeat 522 570
IPR002885 Pentatricopeptide_repeat 349 395
IPR002885 Pentatricopeptide_repeat 311 343
IPR002885 Pentatricopeptide_repeat 491 513
IPR002885 Pentatricopeptide_repeat 248 276
IPR002885 Pentatricopeptide_repeat 213 242
No external refs found!