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  5. AMTR_s00031p00119810

AMTR_s00031p00119810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00031.52

Description : Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana


Gene families : OG_01_0011510 (Archaeplastida) Phylogenetic Tree(s): OG_01_0011510_tree ,
OG_02_0011402 (LandPlants) Phylogenetic Tree(s): OG_02_0011402_tree ,
OG_03_0011461 (SeedPlants) Phylogenetic Tree(s): OG_03_0011461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00031p00119810
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002488_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.05 LandPlants
AT1G16830 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 594 640
IPR002885 Pentatricopeptide_repeat 418 465
IPR002885 Pentatricopeptide_repeat 522 570
IPR002885 Pentatricopeptide_repeat 349 395
IPR002885 Pentatricopeptide_repeat 311 343
IPR002885 Pentatricopeptide_repeat 491 513
IPR002885 Pentatricopeptide_repeat 248 276
IPR002885 Pentatricopeptide_repeat 213 242
No external refs found!