Aliases : evm_27.TU.AmTr_v1.0_scaffold00031.52
Description : Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana
Gene families : OG_01_0011510 (Archaeplastida) Phylogenetic Tree(s): OG_01_0011510_tree ,
OG_02_0011402 (LandPlants) Phylogenetic Tree(s): OG_02_0011402_tree ,
OG_03_0011461 (SeedPlants) Phylogenetic Tree(s): OG_03_0011461_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00031p00119810 | |
Cluster | HCCA: Cluster_189 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01029542001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Archaeplastida | |
LOC_Os10g42760.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Solyc01g080450.4.1 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
Zm00001e002488_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
GSVIVT01029542001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | LandPlants | |
LOC_Os10g42760.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | LandPlants | |
Solyc01g080450.4.1 | No alias | no hits & (original description: none) | 0.05 | LandPlants | |
AT1G16830 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | SeedPlants | |
GSVIVT01029542001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | SeedPlants | |
LOC_Os10g42760.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | SeedPlants | |
Solyc01g080450.4.1 | No alias | no hits & (original description: none) | 0.03 | SeedPlants |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 594 | 640 |
IPR002885 | Pentatricopeptide_repeat | 418 | 465 |
IPR002885 | Pentatricopeptide_repeat | 522 | 570 |
IPR002885 | Pentatricopeptide_repeat | 349 | 395 |
IPR002885 | Pentatricopeptide_repeat | 311 | 343 |
IPR002885 | Pentatricopeptide_repeat | 491 | 513 |
IPR002885 | Pentatricopeptide_repeat | 248 | 276 |
IPR002885 | Pentatricopeptide_repeat | 213 | 242 |
No external refs found! |