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  5. Cba_g26338

Cba_g26338 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g26338

Target Alias Description ECC score Gene Family Method Actions
AT1G20693 NFD2, HMG BETA... high mobility group B2 0.04 OrthoFinder output from all 47 species
Cba_g09992 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G004800.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000025.30 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.44 ATHMG, HMG, SSRP1, NFD No description available 0.01 OrthoFinder output from all 47 species
Dcu_g20176 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
MA_10436440g0030 NFD03, HMGB3, NFD3 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 49 118
No external refs found!