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  5. Cba_g25899

Cba_g25899 (PTAC6)


Aliases : PTAC6

Description : cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6) & original description: none


Gene families : OG0007877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g25899

Target Alias Description ECC score Gene Family Method Actions
AT1G21600 PTAC6 plastid transcriptionally active 6 0.03 OrthoFinder output from all 47 species
Adi_g108903 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Ala_g18811 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.05 OrthoFinder output from all 47 species
Ceric.38G052000.1 PTAC6, Ceric.38G052000 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.04 OrthoFinder output from all 47 species
Ehy_g14377 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.02 OrthoFinder output from all 47 species
GSVIVT01008807001 PTAC6 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Nbi_g00889 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Ore_g40614 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Pir_g17712 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Sam_g10869 No alias cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.04 OrthoFinder output from all 47 species
Solyc04g057870.3.1 PTAC6, Solyc04g057870 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!