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  5. Cba_g25483

Cba_g25483 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g25483

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00226980 PRP39,... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00179p00033790 AT PRP39-2,... No description available 0.03 OrthoFinder output from all 47 species
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g018948 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21759 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16599 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30895.t1 AT PRP39-2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G096600.1 PRP39, Ceric.04G096600 pre-mRNA-processing protein *(PRP39) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020911.47 PRP39 No description available 0.01 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11777 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09806 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028421001 PRP39 No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01028422001 PRP39 No description available 0.02 OrthoFinder output from all 47 species
Gb_23802 PRP39 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
Len_g23571 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g00560.1 PRP39 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
Pir_g60863 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g21848 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29159 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001814 PRP39 pre-mRNA-processing protein *(PRP39) & original... 0.03 OrthoFinder output from all 47 species
Sam_g11835 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22654 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Smo109541 PRP39 Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g03914 AT PRP39-2, PRP39-2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g38613 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g56288 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19871 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000702_P004 PRP39, Zm00001e000702 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 166 245
No external refs found!