Gb_00230


Description : Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana (sp|q9squ6|pp216_arath : 389.0)


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0003421 (SeedPlants) Phylogenetic Tree(s): OG_03_0003421_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_00230
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G46870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.07 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 Archaeplastida
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
MA_946756g0010 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Mp1g15120.1 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.11 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 Archaeplastida
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.11 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.08 Archaeplastida
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 LandPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 LandPlants
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 LandPlants
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 LandPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 LandPlants
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.08 LandPlants
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 LandPlants
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 LandPlants
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 LandPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 SeedPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 SeedPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 SeedPlants
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 14 43
IPR002885 Pentatricopeptide_repeat 191 218
IPR002885 Pentatricopeptide_repeat 117 163
IPR002885 Pentatricopeptide_repeat 225 270
IPR002885 Pentatricopeptide_repeat 49 93
IPR002885 Pentatricopeptide_repeat 292 339
No external refs found!