1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g24620

Cba_g24620 (SR34b, At-SR34b)


Aliases : SR34b, At-SR34b

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24620

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00217480 SR30, ATSRP30,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Als_g20395 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0241.g059740 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G080500.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z097200.1 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.23G039200.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g02742 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38127 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01038636001 At-SR34a, SR34a, SRp34a RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Gb_21063 SR34b, At-SR34b SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g22380.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Len_g20957 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
MA_141465g0010 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Nbi_g09836 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00316 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05721 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29717 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14702 No alias RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18787 No alias RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19709 No alias RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Tin_g30637 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038219_P006 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 115 177
IPR000504 RRM_dom 9 76
No external refs found!