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  5. Cba_g24212

Cba_g24212


Description : not classified & original description: none


Gene families : OG0001264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24212

Target Alias Description ECC score Gene Family Method Actions
Als_g02986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21421 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g24124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g25729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007864 No alias not classified & original description: CDS=1-924 0.05 OrthoFinder output from all 47 species
Cba_g09255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16354 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g37614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g65712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G003300.1 Ceric.08G003300 not classified & original description: pacid=50638706... 0.04 OrthoFinder output from all 47 species
Ceric.09G067900.1 Ceric.09G067900 not classified & original description: pacid=50588290... 0.04 OrthoFinder output from all 47 species
Ceric.12G065400.1 Ceric.12G065400 not classified & original description: pacid=50601520... 0.03 OrthoFinder output from all 47 species
Ceric.1Z218900.1 Ceric.1Z218900 not classified & original description: pacid=50637330... 0.03 OrthoFinder output from all 47 species
Dac_g07769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13989 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15614 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0295.g027183 No alias not classified & original description: CDS=1-1983 0.03 OrthoFinder output from all 47 species
Spa_g07310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15426 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01169 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g08689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09598 No alias PIP/PIPL precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032048 cardiolipin metabolic process IEP HCCA
BP GO:0032049 cardiolipin biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 213 262
IPR002885 Pentatricopeptide_repeat 355 402
IPR002885 Pentatricopeptide_repeat 598 640
IPR002885 Pentatricopeptide_repeat 493 542
IPR002885 Pentatricopeptide_repeat 423 471
IPR002885 Pentatricopeptide_repeat 283 331
IPR002885 Pentatricopeptide_repeat 567 596
IPR002885 Pentatricopeptide_repeat 181 210
IPR002885 Pentatricopeptide_repeat 148 176
No external refs found!