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  5. Cba_g24148

Cba_g24148 (EIN5, AIN1, XRN4, ATXRN4)


Aliases : EIN5, AIN1, XRN4, ATXRN4

Description : exoribonuclease *(XRN4) & original description: none


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g24148

Target Alias Description ECC score Gene Family Method Actions
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.02 OrthoFinder output from all 47 species
Ehy_g05069 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024465001 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g65220.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.02 OrthoFinder output from all 47 species
Len_g50910 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06753 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19229 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430844g0010 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.03 OrthoFinder output from all 47 species
MA_17503g0010 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g13698 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19704 EIN5, AIN1, XRN4, ATXRN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03252 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09288 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 390 676
IPR041412 Xrn1_helical 281 379
IPR004859 Xrn1_N 1 199
IPR001878 Znf_CCHC 209 223
No external refs found!