Cba_g23853 (PEN3, ABCG36, ATPDR8,...)

Aliases : PEN3, ABCG36, ATPDR8, ATABCG36, PDR8

Description : subfamily ABCG transporter & original description: none

Gene families : OG0008801 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008801_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g23853
Cluster	HCCA: Cluster_296

Target	Alias	Description	ECC score	Gene Family Method
Aop_g09538	PDR6, ATPDR6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g43225	PDR4, ATPDR4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g36593	ABCG40, PDR12,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g49266	PDR6, ATPDR6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10260477g0010	PDR1, ATPDR1	ABC transporter G family member 36 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
MA_134489g0020	PDR1, ATPDR1	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013581	PDR_assoc	271	334
IPR013525	ABC_2_trans	55	266
IPR003439	ABC_transporter-like_ATP-bd	456	507

External Links

No external refs found!