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  5. Cba_g23800

Cba_g23800 (LHCA1)


Aliases : LHCA1

Description : not classified & original description: none


Gene families : OG0008436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008436_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g23800
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Aop_g20593 LHCA1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g23799 LHCA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre07.g344950 LHCA5 Photosystem I chlorophyll a/b-binding protein 5,... 0.01 OrthoFinder output from all 47 species
Cre12.g508750 LHCA2*1, LHCA6 Photosystem I chlorophyll a/b-binding protein 6,... 0.01 OrthoFinder output from all 47 species
Pnu_g03357 CAB4, LHCA4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09622 LHCA1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g16603 LHCA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21855 LHCA1 not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 1 102
No external refs found!