Cba_g23753

Description : not classified & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g23753

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00074370	EMB3011,...	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Adi_g060167	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46881.t1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.27	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021589.29	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.01	OrthoFinder output from all 47 species
Len_g01369	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05341	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003642_P002	Zm00001e003642	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	61	213
IPR001650	Helicase_C	260	391

External Links

No external refs found!