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  5. Cba_g22213

Cba_g22213 (AMY1, ATAMY1)


Aliases : AMY1, ATAMY1

Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g22213

Target Alias Description ECC score Gene Family Method Actions
AT1G76130 AMY2, ATAMY2 alpha-amylase-like 2 0.03 OrthoFinder output from all 47 species
Als_g03724 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08486 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40723.t1 AMY3, ATAMY3,... alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12959 AMY1, ATAMY1 alpha amylase & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os01g25510.1 AMY1, ATAMY1,... Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g52710.1 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species
LOC_Os08g36900.1 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Len_g16715 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10936 AMY1, ATAMY1 alpha amylase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g20513 AMY3, ATAMY3 alpha amylase & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 437 497
IPR006047 Glyco_hydro_13_cat_dom 127 416
No external refs found!