Cba_g21209

Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g21209
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00271660	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT3G04840	No alias	Ribosomal protein S3Ae	0.05	OrthoFinder output from all 47 species
AT4G34670	No alias	Ribosomal protein S3Ae	0.04	OrthoFinder output from all 47 species
Adi_g024738	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g060843	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124961	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g38346	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aob_g07768	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g05100	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g20489	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g59790	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0087.g042272	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0825.g088224	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.32G043000.1	Ceric.32G043000	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020710.39	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Cre13.g568650	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Dac_g26683	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g29549	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01021836001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_02289	No alias	component RPS3a of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g10340.1	LOC_Os03g10340	component RPS3a of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os12g21798.1	LOC_Os12g21798	component RPS3a of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_124901g0010	No alias	component RPS3a of SSU proteome	0.06	OrthoFinder output from all 47 species
MA_31004g0010	No alias	component RPS3a of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp6g02810.1	No alias	component RPS3a of SSU proteome	0.03	OrthoFinder output from all 47 species
Msp_g05152	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Pir_g08122	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g60403	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_17260V3.1	Pp3c11_17260	Ribosomal protein S3Ae	0.01	OrthoFinder output from all 47 species
Pp3c22_18300V3.1	Pp3c22_18300	Ribosomal protein S3Ae	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025749	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g07668	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g07669	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g14495	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g30070	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Solyc03g097900.3.1	Solyc03g097900	component RPS3a of SSU proteome	0.02	OrthoFinder output from all 47 species
Solyc06g072490.3.1	Solyc06g072490	component RPS3a of SSU proteome	0.05	OrthoFinder output from all 47 species
Spa_g05776	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Tin_g01747	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e038777_P001	Zm00001e038777	component RPS3a of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001593	Ribosomal_S3Ae	17	221

External Links

No external refs found!

Cba_g21209

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation