Cba_g20846


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g20846

Target Alias Description ECC score Gene Family Method Actions
Adi_g018518 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02274 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11282 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15632 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21523 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04431 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06077 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06166 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06380 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07428 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07435 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30586 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55255 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008666 No alias not classified & original description: CDS=1-2997 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g042984 No alias not classified & original description: CDS=1-3306 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0242.g059819 No alias not classified & original description: CDS=1-2853 0.03 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0451.g070770 No alias not classified & original description: CDS=1-2109 0.03 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g06582 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19836 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29993 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g30003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67869 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67893 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g68863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75393 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033500.1 Ceric.03G033500 not classified & original description: pacid=50573115... 0.03 OrthoFinder output from all 47 species
Ceric.04G104800.1 Ceric.04G104800 not classified & original description: pacid=50632059... 0.03 OrthoFinder output from all 47 species
Ceric.05G023100.1 Ceric.05G023100 not classified & original description: pacid=50578135... 0.04 OrthoFinder output from all 47 species
Ceric.10G025600.1 Ceric.10G025600 not classified & original description: pacid=50611862... 0.02 OrthoFinder output from all 47 species
Ceric.17G075500.1 Ceric.17G075500 not classified & original description: pacid=50617952... 0.03 OrthoFinder output from all 47 species
Ceric.1Z015700.1 VAC1, ECB2,... not classified & original description: pacid=50604577... 0.04 OrthoFinder output from all 47 species
Ceric.25G001500.1 Ceric.25G001500 not classified & original description: pacid=50593180... 0.02 OrthoFinder output from all 47 species
Ceric.26G030400.1 Ceric.26G030400 not classified & original description: pacid=50599909... 0.03 OrthoFinder output from all 47 species
Ceric.36G038100.1 Ceric.36G038100 not classified & original description: pacid=50568680... 0.04 OrthoFinder output from all 47 species
Ceric.37G017500.1 VAC1, ECB2,... ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dac_g23176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24117 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g01384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13073 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19629 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21885 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14439 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g14856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15176 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22778 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23334 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28478 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63291 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007863 No alias not classified & original description: CDS=1-2721 0.04 OrthoFinder output from all 47 species
Sam_g18632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56098 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08688 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17462 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18900 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44241 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004512 inositol-3-phosphate synthase activity IEP HCCA
BP GO:0006020 inositol metabolic process IEP HCCA
BP GO:0006021 inositol biosynthetic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 299 346
IPR002885 Pentatricopeptide_repeat 533 580
IPR002885 Pentatricopeptide_repeat 198 244
IPR002885 Pentatricopeptide_repeat 650 696
IPR002885 Pentatricopeptide_repeat 415 464
IPR002885 Pentatricopeptide_repeat 765 813
No external refs found!