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  5. Cba_g20552

Cba_g20552


Description : component *(RPP3) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g20552

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00182570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT4G25890 No alias 60S acidic ribosomal protein family 0.04 OrthoFinder output from all 47 species
AT5G57290 No alias 60S acidic ribosomal protein family 0.03 OrthoFinder output from all 47 species
Adi_g053256 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g10658 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g35024 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g41418 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene65687.t1 Aspi01Gene65687 component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g46270 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g46271 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g19693 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Gb_31564 No alias component RPP3 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os01g13080.1 LOC_Os01g13080 component RPP3 of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.03 OrthoFinder output from all 47 species
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Msp_g00888 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g18566 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c21_16160V3.1 Pp3c21_16160 60S acidic ribosomal protein family 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006166 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo105823 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc07g009330.4.1 Solyc07g009330 component RPP3 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Spa_g04803 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g17718 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g00251 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!