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  5. Cba_g19558

Cba_g19558


Description : not classified & original description: none


Gene families : OG0014354 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0014354_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g19558
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
Als_g05674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g08852 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25621 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g31922 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014342 No alias not classified & original description: CDS=1-1818 0.05 OrthoFinder output from all 47 species
Sam_g29646 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g12056 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34660 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 480 526
IPR046848 E_motif 598 658
IPR002885 Pentatricopeptide_repeat 149 195
IPR002885 Pentatricopeptide_repeat 556 579
IPR002885 Pentatricopeptide_repeat 322 346
IPR002885 Pentatricopeptide_repeat 351 379
IPR002885 Pentatricopeptide_repeat 250 280
IPR002885 Pentatricopeptide_repeat 222 245
No external refs found!