Cba_g19279 (CLB6, ISPH, HDR)

Aliases : CLB6, ISPH, HDR

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate reductase & original description: none

Gene families : OG0002959 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002959_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g19279
Cluster	HCCA: Cluster_288

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00159100	CLB6, ISPH, HDR,...	Secondary metabolism.terpenoids.methylerythritol...	0.03	OrthoFinder output from all 47 species
AT4G34350	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.04	OrthoFinder output from all 47 species
Als_g32656	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.05	OrthoFinder output from all 47 species
Als_g61203	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.04	OrthoFinder output from all 47 species
Aop_g00615	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.06	OrthoFinder output from all 47 species
Aspi01Gene56141.t1	CLB6, ISPH, HDR,...	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.03	OrthoFinder output from all 47 species
Azfi_s0059.g034489	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.03	OrthoFinder output from all 47 species
Ceric.03G069700.1	CLB6, ISPH, HDR,...	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.04	OrthoFinder output from all 47 species
Dac_g22248	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.03	OrthoFinder output from all 47 species
LOC_Os03g52170.1	CLB6, ISPH, HDR,...	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.02	OrthoFinder output from all 47 species
Len_g23674	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.05	OrthoFinder output from all 47 species
MA_10431651g0010	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.05	OrthoFinder output from all 47 species
MA_13946g0010	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.05	OrthoFinder output from all 47 species
Pir_g04579	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.03	OrthoFinder output from all 47 species
Tin_g05605	CLB6, ISPH, HDR	4-hydroxy-3-methylbut-2-enyl diphosphate reductase &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEA	Interproscan
BP	GO:0050993	dimethylallyl diphosphate metabolic process	None	Extended
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003451	LytB/IspH	114	453

External Links

No external refs found!

Cba_g19279 (CLB6, ISPH, HDR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation