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  5. Lfl_g32549

Lfl_g32549 (RBCS1A)


Aliases : RBCS1A

Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer & original description: none


Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g32549
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Aop_g68980 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Azfi_s0149.g053208 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.12G016100.1 RBCS1A, Ceric.12G016100 small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
GSVIVT01029221001 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Msp_g41232 No alias small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Msp_g43344 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Msp_g43345 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Nbi_g30940 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ore_g35122 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Pp3c4_13260V3.1 RBCS1A, Pp3c4_13260 Ribulose bisphosphate carboxylase (small chain) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g01698 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Smo17395 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 79 186
No external refs found!