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  5. Cba_g18320

Cba_g18320 (SBP1)


Aliases : SBP1

Description : not classified & original description: none


Gene families : OG0000315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000315_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g18320

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0329.g065317 RING not classified & original description: CDS=1-1395 0.03 OrthoFinder output from all 47 species
Ceric.13G040700.1 Ceric.13G040700 not classified & original description: pacid=50635980... 0.04 OrthoFinder output from all 47 species
Dcu_g33928 SBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g32980.1 LOC_Os04g32980 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os10g41580.1 LOC_Os10g41580 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g34020.1 RING, LOC_Os11g34020 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g21964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_24642g0020 ACN1, AAE7 Acetate/butyrate--CoA ligase AAE7, peroxisomal... 0.02 OrthoFinder output from all 47 species
Pir_g11240 SBP1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007211 SBP1 not classified & original description: CDS=385-1452 0.04 OrthoFinder output from all 47 species
Zm00001e001146_P001 SBP1, Zm00001e001146 Probable BOI-related E3 ubiquitin-protein ligase 3... 0.02 OrthoFinder output from all 47 species
Zm00001e008274_P001 Zm00001e008274 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e012302_P001 Zm00001e012302 Probable BOI-related E3 ubiquitin-protein ligase 3... 0.02 OrthoFinder output from all 47 species
Zm00001e024196_P001 RING, Zm00001e024196 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e024199_P001 Zm00001e024199 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004560 alpha-L-fucosidase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0015928 fucosidase activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA

No InterPro domains available for this sequence

No external refs found!