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  5. Cba_g17641

Cba_g17641


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17641

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Ala_g01298 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g02046 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.01G129200.1 Ceric.01G129200 component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.10G002500.1 Ceric.10G002500 component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01030295001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01032756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os01g25610.1 LOC_Os01g25610 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os02g01560.1 LOC_Os02g01560 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g30530.1 LOC_Os05g30530 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
Len_g17934 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_127596g0010 No alias component RPS4 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g12425 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_3690V3.1 Pp3c11_3690 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c1_8290V3.1 Pp3c1_8290 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c25_3736V3.1 Pp3c25_3736 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c7_23800V3.1 Pp3c7_23800 Ribosomal protein S4 (RPS4A) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g06230 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0190.g025275 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g13009 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27349 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27350 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo148442 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc02g070330.4.1 Solyc02g070330 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc02g070340.3.1 Solyc02g070340 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g05578 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g05579 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g17898 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g02542 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e006307_P001 Zm00001e006307 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e011676_P001 Zm00001e011676 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
InterPro domains Description Start Stop
IPR013843 Ribosomal_S4e_N 3 39
IPR013845 Ribosomal_S4e_central_region 95 169
IPR002942 S4_RNA-bd 47 90
IPR005824 KOW 178 210
IPR032277 40S_S4_C 212 255
No external refs found!