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  5. Cba_g17409

Cba_g17409


Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17409
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AMTR_s00046p00028310 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.02 OrthoFinder output from all 47 species
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.04 OrthoFinder output from all 47 species
Ceric.02G042300.1 Ceric.02G042300 component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.06G039400.1 Ceric.06G039400 component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cre12.g514500 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
MA_19350g0010 EMB1080 component RPS11 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp4g23360.1 EMB1080 component RPS11 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp6g10500.1 EMB1080 component RPS11 of SSU proteome 0.01 OrthoFinder output from all 47 species
Msp_g22593 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c1_27980V3.1 EMB1080, Pp3c1_27980 Nucleic acid-binding, OB-fold-like protein 0.02 OrthoFinder output from all 47 species
Smo268639 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc06g073800.3.1 Solyc06g073800 component RPS11 of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc12g042080.2.1 Solyc12g042080 component RPS11 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g31268 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
IPR032440 Ribosomal_S11_N 4 72
No external refs found!