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  5. Cba_g17374

Cba_g17374


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17374

Target Alias Description ECC score Gene Family Method Actions
Adi_g078788 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24940 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07951 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13487 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52145 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07393 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11258 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18171 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0066.g036052 No alias pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g01316 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G107100.1 Ceric.01G107100 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.21G060800.1 Ceric.21G060800 pre-mRNA splicing factor *(SF1) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g07163 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16716 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23974 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.05 OrthoFinder output from all 47 species
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Lfl_g04206 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04920 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426554g0020 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
MA_8555g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9560594g0010 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
Msp_g15293 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45549 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05872 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25454 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04834 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08596 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16656 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31502 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g31857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15689 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18388 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29287 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55171 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001254 No alias pre-mRNA splicing factor *(SF1) & original description:... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023057 No alias pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g09720 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27159 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 816 885
IPR032570 SF1-HH 429 543
IPR004088 KH_dom_type_1 562 635
IPR001878 Znf_CCHC 669 683
No external refs found!