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Cba_g16668


Description : nucleotidyl transferase component *(TRL) of TRAMP RNA-exosome-regulation complex & original description: none


Gene families : OG0001897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g16668

Target Alias Description ECC score Gene Family Method Actions
Aob_g06675 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Ceric.29G060500.1 Ceric.29G060500 nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Ehy_g03821 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Lfl_g03072 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Mp3g05650.1 No alias poly(A) RNA polymerase (TRF4) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003908 No alias not classified & original description: CDS=1-1278 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015565 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR002058 PAP_assoc 336 394
IPR002934 Polymerase_NTP_transf_dom 167 255
No external refs found!