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  5. Cba_g16245

Cba_g16245


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g16245

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00080830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
AT4G14920 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 OrthoFinder output from all 47 species
Adi_g020053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0601.g078900 No alias not classified & original description: CDS=275-3754 0.04 OrthoFinder output from all 47 species
Cba_g22982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 OrthoFinder output from all 47 species
Gb_10088 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 OrthoFinder output from all 47 species
Gb_10246 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g53630.1 LOC_Os03g53630 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
LOC_Os07g07690.1 LOC_Os07g07690 PHD finger transcription factor 0.07 OrthoFinder output from all 47 species
Len_g47387 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.02 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.01 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g25062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g35938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16192 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g071550.3.1 Solyc03g071550 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g082040.2.1 Solyc06g082040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g031580.3.1 Solyc09g031580 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc09g065340.3.1 Solyc09g065340 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008395 Agenet-like_dom 23 117
IPR019787 Znf_PHD-finger 1123 1164
IPR032308 TDBD 1046 1097
No external refs found!