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  5. Cba_g15989

Cba_g15989 (SMG7)


Aliases : SMG7

Description : Nonsense-Mediated mRNA Decay protein *(SMG7) & original description: none


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g15989

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00234570 evm_27.TU.AmTr_v1... Protein SMG7L OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ala_g02690 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0216.g058496 SMG7 not classified & original description: CDS=1-1386 0.03 OrthoFinder output from all 47 species
Cba_g39122 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Ceric.27G021400.1 SMG7, Ceric.27G021400 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Cre16.g648750 SMG7 Protein SMG7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g02039 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g12458 SMG7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033622001 SMG7 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 OrthoFinder output from all 47 species
Len_g28232 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Len_g48171 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Mp8g12080.1 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species
Nbi_g15168 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Ore_g36629 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Pir_g07446 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025727 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Solyc12g019960.2.1 SMG7, Solyc12g019960 SMG7 Nonsense-Mediated mRNA Decay protein 0.04 OrthoFinder output from all 47 species
Spa_g17881 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Spa_g22093 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e009613_P002 SMG7, Zm00001e009613 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR019458 Est1-like_N 114 230
IPR018834 DNA/RNA-bd_Est1-type 243 570
No external refs found!