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  5. Lfl_g32234

Lfl_g32234


Description : component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: none


Gene families : OG0007427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g32234
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Adi_g022466 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ala_g15675 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Azfi_s0067.g036221 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
GSVIVT01008301001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
LOC_Os02g03440.1 LOC_Os02g03440 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
LOC_Os08g05530.1 LOC_Os08g05530 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Pp3c14_15210V3.1 Pp3c14_15210 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Smo230895 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 54 117
No external refs found!