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  5. Cba_g15408

Cba_g15408 (EMB33, SUS2, EMB177, EMB14)


Aliases : EMB33, SUS2, EMB177, EMB14

Description : protein factor *(PRPF8/SUS2) of MAC spliceosome-associated complex & original description: none


Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g15408

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.05 OrthoFinder output from all 47 species
Ala_g15277 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Als_g29416 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Aob_g16557 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Aop_g13684 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Ceric.07G006500.1 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
GSVIVT01017346001 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_00344 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
LOC_Os05g07050.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os06g07080.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Len_g05452 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Len_g44858 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Lfl_g02476 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
MA_7388g0020 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.05 OrthoFinder output from all 47 species
Msp_g13516 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Nbi_g04483 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.06 OrthoFinder output from all 47 species
Ore_g37212 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004862 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Sam_g37843 No alias protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Smo173603 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc07g008880.3.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Spa_g12840 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Tin_g07648 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Zm00001e030094_P003 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Zm00001e036397_P001 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008233 peptidase activity IEA Interproscan
MF GO:0008237 metallopeptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR019582 RRM_spliceosomal_PrP8 1041 1131
IPR019580 Prp8_U6-snRNA-bd 1497 1655
IPR012592 PROCN 451 856
IPR021983 PRP8_domainIV 1815 2044
IPR019581 Prp8_U5-snRNA-bd 1265 1398
IPR012984 PROCT 2267 2387
IPR012591 PRO8NT 92 243
IPR000555 JAMM/MPN+_dom 2155 2254
No external refs found!