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  5. Cba_g15131

Cba_g15131


Description : not classified & original description: none


Gene families : OG0002966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002966_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g15131

Target Alias Description ECC score Gene Family Method Actions
AT5G24740 No alias Protein of unknown function (DUF1162) 0.04 OrthoFinder output from all 47 species
Ceric.03G037800.1 Ceric.03G037800 not classified & original description: pacid=50571745... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.92 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.50 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g09937 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01019366001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g23021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo439148 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g22653 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR031646 VPS13_extend_chorein 146 379
IPR009543 VPS13_VAB 2073 2333
IPR026854 VPS13-like_N 9 123
IPR031642 VPS13_mid_RBG 646 896
IPR031645 VPS13_DH-like 2648 2817
No external refs found!