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  5. Cba_g14938

Cba_g14938


Description : trans-splicing factor *(PPR4) & original description: none


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g14938

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00239430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Aop_g11518 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037201 No alias trans-splicing factor *(PPR4) & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58780.1 LOC_Os04g58780 Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Pir_g08436 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 413 458
IPR002885 Pentatricopeptide_repeat 589 633
IPR002885 Pentatricopeptide_repeat 518 564
IPR033443 PPR_long 700 840
IPR000504 RRM_dom 166 238
IPR002885 Pentatricopeptide_repeat 485 513
IPR002885 Pentatricopeptide_repeat 659 688
IPR002885 Pentatricopeptide_repeat 331 387
No external refs found!