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  5. Cba_g14760

Cba_g14760 (SDE1, RDR6, SGS2)


Aliases : SDE1, RDR6, SGS2

Description : ssRNA polymerase *(RDR6) & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g14760

Target Alias Description ECC score Gene Family Method Actions
Adi_g008879 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39991 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G029700.1 SDE1, RDR6,... ssRNA polymerase *(RDR6) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g42400 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03974 SMD1, RDR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51705 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07935 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19796 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_08299 ATRDRP1, RDR1 Probable RNA-dependent RNA polymerase SHL2 OS=Oryza... 0.03 OrthoFinder output from all 47 species
MA_20320g0020 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g01470 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14128 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g114140.3.1 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.02 OrthoFinder output from all 47 species
Tin_g16349 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 415 993
No external refs found!