Cba_g13812 (MCM4)

Aliases : MCM4

Description : component *(MCM4) of MCM replicative DNA helicase complex & original description: none

Gene families : OG0001056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g13812
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00128450	MCM4,...	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.04	OrthoFinder output from all 47 species
AMTR_s00008p00218750	MCM9,...	Cell cycle.interphase.DNA replication.initiation.MCM8-9...	0.02	OrthoFinder output from all 47 species
AMTR_s00057p00030490	MCM7, PRL,...	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.05	OrthoFinder output from all 47 species
AMTR_s00098p00142430	MCM4,...	DNA replication licensing factor MCM4 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Adi_g007814	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Ala_g24409	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Ala_g28206	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Als_g06966	MCM4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g07824	MCM4	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g07825	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Als_g11754	MCM4	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0544.g076399	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Dac_g14939	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Dac_g15991	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Dcu_g05722	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Dcu_g40402	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
GSVIVT01028118001	MCM7, PRL	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.02	OrthoFinder output from all 47 species
LOC_Os12g37400.1	MCM7, PRL, LOC_Os12g37400	component MCM7 of MCM replicative DNA helicase complex	0.02	OrthoFinder output from all 47 species
Len_g00736	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Len_g11914	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Lfl_g19272	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Lfl_g39364	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
MA_10426237g0010	MCM7, PRL	component MCM7 of MCM replicative DNA helicase complex	0.02	OrthoFinder output from all 47 species
MA_10434231g0010	MCM4	DNA replication licensing factor MCM4 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Mp2g02600.1	MCM7, PRL	component MCM7 of MCM replicative DNA helicase complex	0.01	OrthoFinder output from all 47 species
Msp_g06139	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Msp_g06499	MCM9	component *(MCM9) of MCM8-9 cell cycle auxiliary complex...	0.03	OrthoFinder output from all 47 species
Msp_g09222	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Nbi_g03098	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Nbi_g04377	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Ppi_g01337	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Ppi_g25980	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004187	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Sam_g06717	No alias	component *(MCM4) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Sam_g09734	No alias	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Sam_g27151	No alias	component *(MCM7) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Tin_g06082	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Tin_g12164	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Zm00001e030823_P001	MCM9, Zm00001e030823	component MCM9 of MCM8-9 cell cycle auxiliary complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032508	DNA duplex unwinding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR033762	MCM_OB	251	380
IPR027925	MCM_N	155	244
IPR041562	MCM_lid	682	768
IPR001208	MCM_dom	444	666

External Links

No external refs found!

Cba_g13812 (MCM4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation