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  5. Cba_g13589

Cba_g13589 (SEB1, COBL7, ATSEB1)


Aliases : SEB1, COBL7, ATSEB1

Description : regulatory protein *(COB) of cellulose-hemicellulose network assembly & original description: none


Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13589
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00083860 COB,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
AT1G09790 COBL6 COBRA-like protein 6 precursor 0.05 OrthoFinder output from all 47 species
Aev_g36598 IRX6, COBL4 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Als_g04400 COBL11 regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Als_g15085 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Aob_g19904 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05801.t1 SEB1, COBL7,... regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Dac_g00727 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Dac_g15805 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
GSVIVT01008128001 COB Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
GSVIVT01008129001 IRX6, COBL4 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
GSVIVT01012641001 COBL10 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
GSVIVT01024110001 COB Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01035050001 SEB1, COBL7, ATSEB1 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01036565001 IRX6, COBL4 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
GSVIVT01036566001 COB Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
LOC_Os06g47110.1 COBL10, LOC_Os06g47110 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Lfl_g28447 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
MA_106654g0010 COB COB cellulose microfibrils and hemicellulose interaction protein 0.05 OrthoFinder output from all 47 species
MA_4056g0010 COB COB cellulose microfibrils and hemicellulose interaction protein 0.05 OrthoFinder output from all 47 species
Mp1g17600.1 COBL11 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
Mp7g06600.1 COBL1 COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
Nbi_g08845 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Solyc01g103877.1.1 COBL6, Solyc01g103877 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Solyc02g089130.4.1 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
Solyc09g075540.1.1 SEB1, COBL7,... COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Tin_g29852 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Zm00001e038043_P001 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
InterPro domains Description Start Stop
IPR006918 COBRA_pln 215 395
No external refs found!