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  5. Cba_g13501

Cba_g13501


Description : not classified & original description: none


Gene families : OG0007491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13501

Target Alias Description ECC score Gene Family Method Actions
Adi_g105487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g03588 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05627 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15883 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g19292 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0032.g024762 OTP84 not classified & original description: CDS=238-3549 0.04 OrthoFinder output from all 47 species
Ceric.15G002000.1 Ceric.15G002000 not classified & original description: pacid=50640344... 0.04 OrthoFinder output from all 47 species
Ceric.17G084700.1 Ceric.17G084700 not classified & original description: pacid=50618199... 0.04 OrthoFinder output from all 47 species
Dac_g10625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009384 No alias not classified & original description: CDS=123-3881 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0234.g026528 No alias not classified & original description: CDS=213-3461 0.03 OrthoFinder output from all 47 species
Sam_g08396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10172 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 1108 1188
IPR002885 Pentatricopeptide_repeat 608 649
IPR002885 Pentatricopeptide_repeat 501 548
IPR002885 Pentatricopeptide_repeat 802 848
IPR002885 Pentatricopeptide_repeat 705 750
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 298 345
IPR002885 Pentatricopeptide_repeat 678 703
IPR002885 Pentatricopeptide_repeat 940 965
IPR002885 Pentatricopeptide_repeat 775 797
No external refs found!