Cba_g13480


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13480

Target Alias Description ECC score Gene Family Method Actions
Adi_g079530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0226.g058986 No alias not classified & original description: CDS=214-2052 0.03 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.03 OrthoFinder output from all 47 species
Ceric.25G014900.1 Ceric.25G014900 not classified & original description: pacid=50594354... 0.01 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.02 OrthoFinder output from all 47 species
Ceric.39G011900.1 Ceric.39G011900 not classified & original description: pacid=50583491... 0.02 OrthoFinder output from all 47 species
Ehy_g06938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12133 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 101 161
IPR000504 RRM_dom 301 357
IPR000504 RRM_dom 13 79
No external refs found!