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  5. Cba_g13364

Cba_g13364


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13364

Target Alias Description ECC score Gene Family Method Actions
Aev_g28452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07943.t1 Aspi01Gene07943 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41709.t2 Aspi01Gene41709 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41710.t1 Aspi01Gene41710 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.03 OrthoFinder output from all 47 species
Ceric.20G007500.1 Ceric.20G007500 not classified & original description: pacid=50566839... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g10280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g48146 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g37255 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07984 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 512 575
IPR000504 RRM_dom 415 479
IPR000504 RRM_dom 335 403
No external refs found!