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  5. Cba_g13057

Cba_g13057


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13057

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00082900 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.02 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g16369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g12296 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10436637g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g31209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007365_P001 Zm00001e007365 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e012880_P004 Zm00001e012880 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 234 303
IPR000504 RRM_dom 411 478
IPR000504 RRM_dom 314 377
No external refs found!