1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g12627

Cba_g12627


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g12627
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04893 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene12777.t1 Aspi01Gene12777 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G065200.1 Ceric.19G065200 not classified & original description: pacid=50576378... 0.03 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g20786 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
Nbi_g36090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.04 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 105 141
IPR002885 Pentatricopeptide_repeat 730 773
IPR002885 Pentatricopeptide_repeat 647 705
IPR002885 Pentatricopeptide_repeat 556 581
IPR002885 Pentatricopeptide_repeat 283 306
IPR002885 Pentatricopeptide_repeat 590 617
IPR002885 Pentatricopeptide_repeat 412 437
IPR002885 Pentatricopeptide_repeat 170 200
IPR002885 Pentatricopeptide_repeat 522 548
No external refs found!